An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   User-Input FASTA   ][   Motif #2   ]

Motif Logos

Motif Energy Dot Plot (0 + 10 + 0)

Motif Secondary Structure ( 0 + 10 + 0)

Motif Statistics  
Gene ID Chromosome Strand  
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1     42 51 0
2     57 66 0
3     38 47 0
4     6 15 0
5     91 100 0
6     10 19 0
7     33 42 0
8     70 79 0
9     57 66 0
10     75 84 0
11     2 11 0
12     11 20 0
13     187 196 0
14     11 20 0
15     94 103 0
16     85 94 0
17     17 26 0
18     117 126 0

Motif Simplified PSSM
A 0 0 0 0 0 0 0 0 7 0
C 0 0 9 0 0 0 0 0 0 8
G 0 4 0 0 0 0 0 7 0 0
T 6 5 0 9 7 9 6 0 0 0

Motif PSSM
Position A C G T
1 0 0 0 58
2 0 0 38 53
3 0 93 0 0
4 0 0 0 93
5 0 0 0 73
6 0 0 0 93
7 0 0 0 63
8 0 0 73 0
9 68 0 0 0
10 0 78 0 0

Motif FASTA
1 ctaccctcat GTCTTTGGAC tgattatctt
2 tggactgatt ATCTTTTGGC attttatatt
3 aaaagcaaaa AGCTTTGGAA aaacaga
4 ggtgg ATCTTTTGAA agtcccaaaa
5 ccatgctatc TTCTTTTGAC gcactataac
6 cctccaggc ATCTTTTGAA atgtgcaaca
7 ggacctgggc TTCTGTGGCC tccagcctgc
8 cgtcgctgat TGCTTTTACC atgttggatc
9 ctctgcaagc TGCTGTTGAC aaaaataaat
10 tacagaactc AGCTTTTGAC ctctgctggt
11 t TGCTTTTGCC aagagtaagt
12 gttcttctgg TTCTTTTAAC ctcccaaatt
13 cgagcagggt TTCTTTATAC tggtgaagga
14 gttcttccag TTCTTTTAAC atgtcaaact
15 tggatgtcaa TGCTGTTGCC ttggatacgt
16 gtagtcgata TCCTTTTGAC tctcctcag
17 cagaagaagt TTCTTTGGAC agccctgaaa
18 tgttctctgt GGCTGTGGAC agtcgttgcc


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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