An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   User-Input FASTA   ][   Motif #3   ]

Motif Logos

Motif Energy Dot Plot (0 + 8 + 0)

Motif Secondary Structure ( 0 + 8 + 0)

Motif Statistics  
Gene ID Chromosome Strand  
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1     87 94 0
2     104 111 0
3     61 68 0
4     43 50 0
5     79 86 0
6     9 16 0
7     18 25 0
8     37 44 0
9     44 51 0
10     24 31 0
11     96 103 0
12     233 240 0
13     8 15 0
14     46 53 0
15     140 147 0
16     65 72 0
17     20 27 0
18     97 104 0
19     57 64 0

Motif Simplified PSSM
A 0 0 3 6 0 0 0 0
C 0 0 6 0 0 6 0 0
G 3 8 0 0 6 0 0 9
T 6 0 0 4 4 3 9 0

Motif PSSM
Position A C G T
1 0 0 31 55
2 0 0 84 0
3 31 55 0 0
4 60 0 0 36
5 0 0 55 36
6 0 64 0 31
7 0 0 0 93
8 0 0 88 0

Motif FASTA
1 cttcagccat GGAAGTTG ggggtccagg
2 ctgaaccatc TGCTGCTG tgag
3 gcgactccca GGCAGCTT
4 ttcaaaacaa TGCATCTG cagagagatg
5 ataaatggac TGTATTTG agagttcaag
6 actcgaat TCCTGCTG ggaagtcggc
7 gtggtagcgg TGTTGCTG ttgaaacagg
8 agtttacaaa TGATTTTG ctaaggaatt
9 tccaggccag TGATGCTG tagtttacag
10 gccactctgg TGCTGCTG cccctcctgg
11 aagaacagtt AGCATCTG ct
12 ttagttgtca TGCAGCTG tagatagatg
13 ttggtga AGAAGCTG agtgatttca
14 gttttttccg GCCAGCTG gcagggagaa
15 cgttgccagc TGCATCTG ttgccctcac
16 cgttttggca GGAATTTG gacacctttg
17 ggggcacaga GGAAGTTG ctgcttggct
18 aagaacagtc TGCATTTG tgatacacca
19 ttgacaccca GGCTACTG acattgttct


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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