An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   User-Input FASTA   ][   Motif #4   ]

Motif Logos

Motif Energy Dot Plot (0 + 10 + 0)

Motif Secondary Structure ( 0 + 10 + 0)

Motif Statistics  
Gene ID Chromosome Strand  
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1     42 51 0
2     60 69 0
3     77 86 0
4     64 73 0
5     38 47 0
6     67 76 0
7     41 50 0
8     62 71 0
9     72 81 0
10     90 99 0
11     57 66 0
12     95 104 0
13     83 92 0
14     17 26 0
15     14 23 0
16     21 30 0
17     96 105 0
18     41 50 0

Motif Simplified PSSM
A 0 0 0 0 0 7 0 0 0 4
C 3 7 0 0 6 0 0 8 8 4
G 6 0 0 9 3 0 9 0 0 0
T 0 0 9 0 0 0 0 0 0 0

Motif PSSM
Position A C G T
1 0 33 58 0
2 0 68 0 0
3 0 0 0 88
4 0 0 93 0
5 0 58 33 0
6 73 0 0 0
7 0 0 93 0
8 0 78 0 0
9 0 83 0 0
10 43 38 0 0

Motif FASTA
1 gttaccccct GTTGCAGCCA gctcccttag
2 tccgggctgg CCGGGAGCCC cagggtgtct
3 ccacggtctg GCTGCAGCCC gtgacagcca
4 ttagccgaat CCTGCAGCTT gggcctcaag
5 aagaacctag GCTGGGGCCT ttcagcattt
6 cagccatcca CCTGCAGCCT ctccctctga
7 ttcttcttct GATGCTGCCA g
8 agagtgagga GCTGCAGCCA ctgagccagc
9 aacttgtgta CCTGCAGACA tcaataagga
10 aggggcccag GTTGGAGCCA acgtgcaatc
11 tgatgctgtg GCTGCAGACC aacaaatctg
12 agagaccaga GCTGGAGCTC agcagacatt
13 tttcatggtt TATGCAGCCC cagcaaaggg
14 atccaacttg GCTGCAGCCA gactgacagg
15 gtgttttgga GATGCAGACA aaatatcttt
16 ctgtaccaca CCTGGAGCCA ggtgctctat
17 accagatgcc CCTGGGGCCC tatgtgaccg
18 ttccctgtgc GCTGTTGCCC atccaagcct


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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