An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   User-Input FASTA   ][   Motif #5   ]

Motif Logos

Motif Secondary Structure ( 0 + 10 + 0)

Motif Statistics  
Gene ID Chromosome Strand  
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1     78 87 0
2     75 84 0
3     48 57 0
4     28 37 0
5     41 50 0
6     167 176 0
7     73 82 0
8     162 171 0
9     77 86 0
10     151 160 0
11     67 76 0
12     40 49 0
13     40 49 0
14     309 318 0
15     25 34 0

Motif Simplified PSSM
A 0 4 0 9 0 0 0 0 0 0
C 5 6 9 0 0 9 3 5 7 3
G 3 0 0 0 6 0 0 0 0 0
T 0 0 0 0 0 0 6 5 3 6

Motif PSSM
Position A C G T
1 0 51 33 0
2 39 57 0 0
3 0 87 0 0
4 93 0 0 0
5 0 0 63 0
6 0 93 0 0
7 0 33 0 63
8 0 51 0 45
9 0 69 0 26
10 0 33 0 63

Motif FASTA
1 atggagggct GACAGCTTCC cgcctcctcc
2 ccagggttgt CACAGCTTCC cctgtggtgt
3 aagtaactga CCCAGCCCTT tgcccccacc
4 ggacaaggcc CACATCTTCT cccaagttgt
5 cttcctctcg CCCACCTTCT cgctaccagt
6 ctcatggttc TCCAGCTCCT gtctctacta
7 agccttgggc CCCAGCCCCC actccgctcc
8 cagccttctc GACAGCCTTT tactgtgaac
9 ggtcgtggtc CAGAGCTCCT tgggtcccat
10 atattttgga ACCATCCTCT acacag
11 aggaaagcat GCCATCTTCT cccatgatta
12 tggaggcagg CCCAGCTCTT caagaggagg
13 tagcgaagca CCCACCTCCC ttttctcagc
14 cgcgggtatg GCCAGCCCCT gggggaagca
15 aacttaaaat GACAGCTCTC tattctgagg


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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