An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   User Selected Region (Exonic)   ][   Motif #3   ]

Motif Logos

Motif Energy Dot Plot (25 + 8 + 25)

Motif Secondary Structure ( 25 + 8 + 25)

Motif Statistics  
Gene ID Chromosome Strand Exon
1
Intron
1
Exon
2
Intron
2
Exon
3
Intron
3
Exon
4
Intron
4
Exon
5
Intron
5
Exon
6
Intron
6
Exon
7
Intron
7
Exon
8
Intron
8
Exon
9
Intron
9
Exon
10
Intron
10
Exon
11
Intron
11
Exon
12
Intron
12
Exon
13
Intron
13
Exon
14
Intron
14
Exon
15
Intron
15
Exon
16
Intron
16
Exon
17
Intron
17
Exon
18
Intron
18
Exon
19
Intron
19
Exon
20
Intron
20
Exon
21
Intron
21
Exon
22
Intron
22
Exon
23
Intron
23
Exon
24
Intron
24
Exon
25
Intron
25
Exon
26
 
ENSG00000012048 HMM 17 -1                                                                                                                                                          0/0
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1 ENSG00000012048  17  41650442 41650449 -1
2 ENSG00000012048  17  41650436 41650443 -1
3 ENSG00000012048  17  41629354 41629361 -1
4 ENSG00000012048  17  41629377 41629384 -1
5 ENSG00000012048  17  41629403 41629410 -1
6 ENSG00000012048  17  41629414 41629421 -1
7 ENSG00000012048  17  41622438 41622445 -1
8 ENSG00000012048  17  41621093 41621100 -1

Motif Simplified PSSM
A 0 0 0 0 5 7 9 4
C 0 0 9 5 0 2 0 0
G 0 0 0 0 5 0 0 6
T 7 8 0 5 0 0 0 0

Motif PSSM
Position A C G T
1 0 0 0 70
2 0 0 0 82
3 0 93 0 0
4 0 47 0 48
5 48 0 48 0
6 71 24 0 0
7 94 0 0 0
8 37 0 59 0

Motif FASTA
1 gagagtggat TTCCGAAG ctgacagatg
2 gagagtggat TTCCGAAG ctgacagatg
3 tctcctgaac ATCTAAAA gatgaagttt
4 agtttctatc ATCCAAAG tatgggctac
5 acagaaaccg TGCCAAAA gacttctaca
6 gccaaaagac TTCTACAG agtgaacccg
7 gatctgattc TTCTGAAG ataccgttaa
8 tcagtttgga TTCTGCAA aaaag


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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