An integrated system to identify conserved sequence elements
      associated to mRNA splicing



[   GIBBS   ][   5'-flanking Region (Intronic)   ][   Motif #5   ]

Motif Logos

Motif Secondary Structure ( 25 + 10 + 25)

Motif Statistics  
Gene ID Chromosome Strand Exon
1
Intron
1
Exon
2
Intron
2
Exon
3
Intron
3
Exon
4
Intron
4
Exon
5
Intron
5
Exon
6
Intron
6
Exon
7
Intron
7
Exon
8
Intron
8
Exon
9
Intron
9
Exon
10
Intron
10
Exon
11
Intron
11
Exon
12
Intron
12
Exon
13
Intron
13
Exon
14
Intron
14
Exon
15
Intron
15
Exon
16
Intron
16
Exon
17
Intron
17
Exon
18
Intron
18
Exon
19
Intron
19
Exon
20
Intron
20
Exon
21
Intron
21
Exon
22
Intron
22
Exon
23
Intron
23
Exon
24
Intron
24
Exon
25
Intron
25
Exon
26
 
ENSG00000012048 HMM 17 -1                                                                                                                                                          0/0
Use HMM Models to Scan This Gene Set M-->Motif s-->selected region  

Motif Information
Detail ID Gene ID Chromosome Start Position End Position Strand View ProSplicer Splice View
1 ENSG00000012048  17  41650120 41650129 -1
2 ENSG00000012048  17  41650270 41650279 -1
3 ENSG00000012048  17  41650280 41650289 -1
4 ENSG00000012048  17  41650290 41650299 -1
5 ENSG00000012048  17  41650120 41650129 -1
6 ENSG00000012048  17  41650270 41650279 -1
7 ENSG00000012048  17  41650280 41650289 -1
8 ENSG00000012048  17  41650290 41650299 -1
9 ENSG00000012048  17  41629690 41629699 -1
10 ENSG00000012048  17  41629840 41629849 -1
11 ENSG00000012048  17  41629938 41629947 -1
12 ENSG00000012048  17  41630018 41630027 -1
13 ENSG00000012048  17  41624784 41624793 -1
14 ENSG00000012048  17  41624943 41624952 -1

Motif Simplified PSSM
A 5 0 5 9 9 9 4 9 8 7
C 0 7 0 0 0 0 4 0 0 0
G 0 0 0 0 0 0 0 0 0 0
T 4 0 4 0 0 0 0 0 0 0

Motif PSSM
Position A C G T
1 54 0 0 42
2 0 67 0 0
3 54 0 0 42
4 93 0 0 0
5 93 0 0 0
6 93 0 0 0
7 35 41 0 0
8 93 0 0 0
9 80 0 0 0
10 74 0 0 0

Motif FASTA
1 ctccgtctct ACTAAAAATA caaaaattag
2 cgagactgtc TCAAAACAAA acaaaacaaa
3 tcaaaacaaa ACAAAACAAA acaaaacaaa
4 acaaaacaaa ACAAAACAAA aaacaccggc
5 ctccgtctct ACTAAAAATA caaaaattag
6 cgagactgtc TCAAAACAAA acaaaacaaa
7 tcaaaacaaa ACAAAACAAA acaaaacaaa
8 acaaaacaaa ACAAAACAAA aaacaccggc
9 gtaatctatt TTTAAAAAAT tactcccact
10 ttagtgatac AGAAAATAAT agtgcaactt
11 aaacaaggac TCTAAATAAC tttgatggtc
12 aaatttgatt TTTAAAAAAA atcacaggta
13 tgtctgtacc AAAAAATAAA aaattagcca
14 cgaaactcca TCTAAAAAAA aaaaag


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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