An integrated system to identify conserved sequence elements
      associated to mRNA splicing



      Title: Case Study 1
Description: An Alternative Spliced Gene (BRCA1)
      Login: 2004-07-21 04:28:10

Region
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Motif Graph
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Show All Header index
Gene
5'-flanking
Region (Intronic)
User Selected
Region (Exonic)
3'-flanking
Region (Intronic)

MEME
GIBBS

Method Region Motif_id Detail Counts Length
MEME 3'-flanking Region (Intronic) Motif #1 5 50 nucleotides
MEME 3'-flanking Region (Intronic) Motif #2 6 50 nucleotides
MEME 3'-flanking Region (Intronic) Motif #3 2 50 nucleotides
MEME User Selected Region (Exonic) Motif #1 2 50 nucleotides
MEME User Selected Region (Exonic) Motif #2 5 14 nucleotides
MEME User Selected Region (Exonic) Motif #3 7 11 nucleotides
MEME 5'-flanking Region (Intronic) Motif #1 4 42 nucleotides
MEME 5'-flanking Region (Intronic) Motif #2 5 50 nucleotides
MEME 5'-flanking Region (Intronic) Motif #3 5 50 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #1 13 15 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #2 11 10 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #3 8 14 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #4 6 15 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #5 10 19 nucleotides
GIBBS User Selected Region (Exonic) Motif #1 4 10 nucleotides
GIBBS User Selected Region (Exonic) Motif #2 5 10 nucleotides
GIBBS User Selected Region (Exonic) Motif #3 8 8 nucleotides
GIBBS User Selected Region (Exonic) Motif #4 2 10 nucleotides
GIBBS User Selected Region (Exonic) Motif #5 3 11 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #1 21 12 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #2 15 11 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #3 19 8 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #4 9 14 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #5 14 10 nucleotides


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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    [email] => hcc@db.csie.ncu.edu.tw
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