An integrated system to identify conserved sequence elements
      associated to mRNA splicing



      Title: Case Study 2
Description: A Variety of Genes Which Has ESEs
      Login: 2004-07-21 04:39:51

Region
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Motif Graph
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Show All Header index
Gene
5'-flanking
Region (Intronic)
User Selected
Region (Exonic)
3'-flanking
Region (Intronic)

MEME
GIBBS

Method Region Motif_id Detail Counts Length
MEME 3'-flanking Region (Intronic) Motif #1 4 50 nucleotides
MEME 3'-flanking Region (Intronic) Motif #2 4 47 nucleotides
MEME 3'-flanking Region (Intronic) Motif #3 5 21 nucleotides
MEME User Selected Region (Exonic) Motif #1 14 8 nucleotides
MEME User Selected Region (Exonic) Motif #2 7 14 nucleotides
MEME User Selected Region (Exonic) Motif #3 2 9 nucleotides
MEME 5'-flanking Region (Intronic) Motif #1 3 50 nucleotides
MEME 5'-flanking Region (Intronic) Motif #2 7 41 nucleotides
MEME 5'-flanking Region (Intronic) Motif #3 3 49 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #1 22 12 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #2 14 10 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #3 13 11 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #4 8 11 nucleotides
GIBBS 3'-flanking Region (Intronic) Motif #5 8 11 nucleotides
GIBBS User Selected Region (Exonic) Motif #1 11 10 nucleotides
GIBBS User Selected Region (Exonic) Motif #2 9 11 nucleotides
GIBBS User Selected Region (Exonic) Motif #3 10 8 nucleotides
GIBBS User Selected Region (Exonic) Motif #4 5 10 nucleotides
GIBBS User Selected Region (Exonic) Motif #5 12 10 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #1 22 10 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #2 6 11 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #3 17 8 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #4 18 10 nucleotides
GIBBS 5'-flanking Region (Intronic) Motif #5 8 12 nucleotides


Department of Computer Science and Information Engineering
National Central University
No.300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan, 320, R.O.C.
Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University
1001 Ta Hsueh Road, Hsinchu, Taiwan 300, ROC
Contact with bryan@mail.NCTU.edu.tw







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